PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.J2RHX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 186aa    MW: 20721.9 Da    PI: 10.4214
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.J2RHXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.6e-071374655
                 S--HHHHHHHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 +ft+++++e+e+  ++++y  p ++  + LA+k            ++ +qV +WFqN+R+  
  Aradu.J2RHX 13 RFTPTEVTEMETILQNHNYamPARDVLTALAEKFseslerkgkiTVQMKQVWNWFQNKRYAI 74
                 699************977666999******************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0034781IPR001356Homeobox domain
SuperFamilySSF466891.01E-91278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-71381IPR009057Homeodomain-like
PROSITE profilePS500718.8591377IPR001356Homeobox domain
CDDcd000868.76E-51375No hitNo description
PfamPF000469.8E-51374IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRPPSNGVP AFRFTPTEVT EMETILQNHN YAMPARDVLT ALAEKFSESL ERKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDESTTVRN IPQLTAGPIP ATSGSGYFSM  120
LQGAASLPNI ACKYFSIDDH SNKLSSSFVM KHSNQLFRLM IILTILFSNP FSPTSIDSLS  180
SLSIVF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.J2RHX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993774.14e-84protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
TrEMBLA0A445DY617e-77A0A445DY61_ARAHY; Uncharacterized protein
STRINGXP_004511250.18e-58(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2094844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-44sequence-specific DNA binding transcription factors;sequence-specific DNA binding