PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.J6XYM

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1811aa MW: 204512 Da PI: 5.0744

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.J6XYM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	48	103	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk Aradu.J6XYM 48 PKRQMKTPFQLETLEKAYALETYPSETMRAELSQKLGLSDRQLQMWFCHRRLKDKK 103 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-19	27	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-17	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	44	104	IPR001356	Homeobox domain
SMART	SM00389	5.5E-18	46	108	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	48	103	IPR001356	Homeobox domain
CDD	cd00086	1.17E-12	49	98	No hit	No description
PROSITE profile	PS50827	14.327	609	668	IPR018501	DDT domain
SMART	SM00571	8.4E-15	611	668	IPR018501	DDT domain
Pfam	PF02791	4.2E-14	615	665	IPR018501	DDT domain
Pfam	PF05066	9.7E-16	803	870	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.5E-9	1011	1055	IPR028942	WHIM1 domain
Pfam	PF15613	9.0E-13	1194	1266	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1811 aa Download sequence Send to blast
MEGEAASDAE IENNNTQKRE DVVGDNSNEN NNGSNSKIGN SNEGQSKPKR QMKTPFQLET 60 LEKAYALETY PSETMRAELS QKLGLSDRQL QMWFCHRRLK DKKDLPPKKQ KKAVPAPVPA 120 PVPVPAPPVP DSPPDLRLGP EHVNEYGSGS GSGSSPLTRP EFRNVVPRGG MLGYYEPPQA 180 MMELRAIACV EAQLGQPLRE DGPILGVEFD PLPPGAFGAP IAVTEQQKRP SLAYDSKMYE 240 RHDVRTNKVG FLYPVTAQYL DDLAMARTLP EYPFLPNQPG IRSDAFGQLN PPHLHDPMDG 300 PSRTSFPINE QLHKIHATQS HSARVRVSSQ QDKQVIPYPS PPREVDVAQP RESYANIANA 360 GIDSHFADHP IAGQENPYAL PSGQVLQNDM TIRIEKKRKI DDAKIAKEVE AYETRMRKEL 420 EKQDNLRRKN EERLRKEMER QERERKKEEE RLIRERQREE ERSRREQRRE IERREKFLMK 480 EHLRAEKRRR KEELRKEKEA ERRKAALEKA AARRIAKESM ELIEDEQLEL MELAATSKGL 540 SSIIQLDLDT LQNLESFRGQ QFIFMLLMES KICDSSNFQC TSVDIRNKEA SDGDVSLFMS 600 TSGRIMMPLC LLYEIVMVWR FLITFADVLE LWPFTLDEFV QAFHDYDSRL LGEIHVTLLK 660 VIIKDIEDVA RTPSTGLGIS QNGAANPGGG HPEIVEGAYA WGFDIRNWQK NLNQLTWPEV 720 FRQLALSAGF GPKLKKRSIT WSYANDKDEI KWIKMYYNCR GEVVKISFLH FVXXXXXXXX 780 XLAKMQEKGL LAPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELAEKI QKSGLRDLTT 840 SKTPEASISV ALTRDTKLFE RIAPSTYRVR TAFRKDPADA ESILSAARKK IQIFENGFPA 900 GEDADDVERE ESESDEVDED PDVDDLVNPS SADPISGHFD EPNVSTPNGK ENLDNDVKLD 960 QNEFEIDLPC FPEDRYKEAD CPGSVTEQPV VCEDLNTGNP DQDNMEIDES QSGESWVQGL 1020 AEGEYSDLSV EERLNALVAL IGVANEGNYI RVVLEDRLEA ANALKKQMWA EAQIDKVRLK 1080 DDTINKPDIP LLIANKVETH DTYPAAVEGS QSPMLDININ SINIETSPGT AENQKPAPAA 1140 QSLHGEKSSQ IQDLCTGTGP DHPQVQVPPQ YSKRSRSQLK SYIAHIAEEM CIYRSLPLGQ 1200 DRRRNRYWQF VASASSNDPG SGRIFVEYHD GNWELIDSEE ALDILLAALD SRGIRESHLR 1260 LMLKRIEKSF KENVRRNTQC ASAKIGSKDK FSIKSEENNE PYSIPDRHDG ADSPSSTLHN 1320 LNSDKLETSS SFKVHQYYVQ QNMGKRDANL WWTFVTSVCN LILLRTPTVN PATGLSLQIM 1380 DLVLPSMHFI VETSYPKMFL WNLLFPCGQD CLRFCLLVLR SILYLHLELQ ASVLPEAFGT 1440 IWTNDARKHW GVRLSKSSSV EELLQILALF EKALRRDFLS SNFSTTDELL GLSNMGGNAS 1500 LTSTDPELVA VLPWVPQTTA AVSLRLLEID SSINYVHLEI PEPCKEKEAK EYIKLPSRYT 1560 SFKCNREVEP AELGHGEFIK DKSASKKIVR SGNKRGRGSN DQGRGKKMSK RMYSSKRDTG 1620 RRNVKVNENL SDKLKQQGRV LQGSAGGRGR RTVRKRRVEK RAVEDLLLGH TAVSHSPNID 1680 REPLRRFDEE WDGERASPMT PVHIEIDDNS NSAEEVESDD NGQAVEYDQG NWEVGYNGIP 1740 ANSWGRDFAG MSDEDADAFE DDNDNNNDIG IEENEEEDSE ADVMSEGSDG MANRVINEEG 1800 SDSSESEDSY D

Sequence ? help Back to Top

Protein Sequence Length: 1811 aa Download sequence Send to blast

MEGEAASDAE IENNNTQKRE DVVGDNSNEN NNGSNSKIGN SNEGQSKPKR QMKTPFQLET  60
LEKAYALETY PSETMRAELS QKLGLSDRQL QMWFCHRRLK DKKDLPPKKQ KKAVPAPVPA  120
PVPVPAPPVP DSPPDLRLGP EHVNEYGSGS GSGSSPLTRP EFRNVVPRGG MLGYYEPPQA  180
MMELRAIACV EAQLGQPLRE DGPILGVEFD PLPPGAFGAP IAVTEQQKRP SLAYDSKMYE  240
RHDVRTNKVG FLYPVTAQYL DDLAMARTLP EYPFLPNQPG IRSDAFGQLN PPHLHDPMDG  300
PSRTSFPINE QLHKIHATQS HSARVRVSSQ QDKQVIPYPS PPREVDVAQP RESYANIANA  360
GIDSHFADHP IAGQENPYAL PSGQVLQNDM TIRIEKKRKI DDAKIAKEVE AYETRMRKEL  420
EKQDNLRRKN EERLRKEMER QERERKKEEE RLIRERQREE ERSRREQRRE IERREKFLMK  480
EHLRAEKRRR KEELRKEKEA ERRKAALEKA AARRIAKESM ELIEDEQLEL MELAATSKGL  540
SSIIQLDLDT LQNLESFRGQ QFIFMLLMES KICDSSNFQC TSVDIRNKEA SDGDVSLFMS  600
TSGRIMMPLC LLYEIVMVWR FLITFADVLE LWPFTLDEFV QAFHDYDSRL LGEIHVTLLK  660
VIIKDIEDVA RTPSTGLGIS QNGAANPGGG HPEIVEGAYA WGFDIRNWQK NLNQLTWPEV  720
FRQLALSAGF GPKLKKRSIT WSYANDKDEI KWIKMYYNCR GEVVKISFLH FVXXXXXXXX  780
XLAKMQEKGL LAPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTVLELAEKI QKSGLRDLTT  840
SKTPEASISV ALTRDTKLFE RIAPSTYRVR TAFRKDPADA ESILSAARKK IQIFENGFPA  900
GEDADDVERE ESESDEVDED PDVDDLVNPS SADPISGHFD EPNVSTPNGK ENLDNDVKLD  960
QNEFEIDLPC FPEDRYKEAD CPGSVTEQPV VCEDLNTGNP DQDNMEIDES QSGESWVQGL  1020
AEGEYSDLSV EERLNALVAL IGVANEGNYI RVVLEDRLEA ANALKKQMWA EAQIDKVRLK  1080
DDTINKPDIP LLIANKVETH DTYPAAVEGS QSPMLDININ SINIETSPGT AENQKPAPAA  1140
QSLHGEKSSQ IQDLCTGTGP DHPQVQVPPQ YSKRSRSQLK SYIAHIAEEM CIYRSLPLGQ  1200
DRRRNRYWQF VASASSNDPG SGRIFVEYHD GNWELIDSEE ALDILLAALD SRGIRESHLR  1260
LMLKRIEKSF KENVRRNTQC ASAKIGSKDK FSIKSEENNE PYSIPDRHDG ADSPSSTLHN  1320
LNSDKLETSS SFKVHQYYVQ QNMGKRDANL WWTFVTSVCN LILLRTPTVN PATGLSLQIM  1380
DLVLPSMHFI VETSYPKMFL WNLLFPCGQD CLRFCLLVLR SILYLHLELQ ASVLPEAFGT  1440
IWTNDARKHW GVRLSKSSSV EELLQILALF EKALRRDFLS SNFSTTDELL GLSNMGGNAS  1500
LTSTDPELVA VLPWVPQTTA AVSLRLLEID SSINYVHLEI PEPCKEKEAK EYIKLPSRYT  1560
SFKCNREVEP AELGHGEFIK DKSASKKIVR SGNKRGRGSN DQGRGKKMSK RMYSSKRDTG  1620
RRNVKVNENL SDKLKQQGRV LQGSAGGRGR RTVRKRRVEK RAVEDLLLGH TAVSHSPNID  1680
REPLRRFDEE WDGERASPMT PVHIEIDDNS NSAEEVESDD NGQAVEYDQG NWEVGYNGIP  1740
ANSWGRDFAG MSDEDADAFE DDNDNNNDIG IEENEEEDSE ADVMSEGSDG MANRVINEEG  1800
SDSSESEDSY D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.J6XYM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025621944.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A445BBM8	0.0	A0A445BBM8_ARAHY; Uncharacterized protein
STRING	GLYMA13G30860.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator