PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.J7N5K

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 679aa MW: 73525.9 Da PI: 5.5522

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.J7N5K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	410	2.1e-125	312	667	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp + s +++++a+++f+ +sP++kfsh+taN Aradu.J7N5K 312 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPIVPHS----QKVASAFQVFNGISPFVKFSHFTAN 405 579*************************************************************996....89999**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fA++lg+pfef va+++ ++++e+L+v+ Aradu.J7N5K 406 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFG-VAEKVGNVDPERLNVS 498 **********************************************....***********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + Ea+aV++ h+l+d ++s ++ +L+l+++l Pkv++vveq+++ n++sFl rf+ea++yysalfdsl +++++eseer++vE++ll+rei+ Aradu.J7N5K 499 KAEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVITVVEQDLS-NTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIR 589 ******9..999999999999....***************97.699**************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r+ + + +++Wre+l+++GF+ ++l +aa+qa+lll +++s+gy++ e++g l lgWkd L+++SaWr Aradu.J7N5K 590 NVLAVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 667 *****998887.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.419	285	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-123	312	667	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MAACALFTGA SNNTAEDGNV STTTTTTNGA AAAGSGSSPL TSASSNISAS EEQQQQQHML 60 LLHGTSGFMN QPHCFLVEPP TTSTPPLSFK RAPQLVQFAD SPIRNNSANI VEVVTSSPSS 120 MDESSAASNW IDGILKDLIH SSNSVSIPQL INNVREIIYP CNPNLAMLLE YRLRLLTSDS 180 SSAAVPAAPP PPPPPQNKTP VMKQTNTSNM HAYGAIHFQD SSLNQYWPVV PPTPLDSNNN 240 NSVSLANTLP SPPPPPPPPQ PPQQEKPEED LVTAPATTTS TATATEMAVL TRKKTEEMNQ 300 QKKKDEEGLH LLTLLLQCAE AVSAENLEDA NKMLLEISQL STPFGTSAQR VAAYFSEAIS 360 ARLVSSCLGI YATLPIVPHS QKVASAFQVF NGISPFVKFS HFTANQAIQE AFEREERVHI 420 IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMEAL EATGKRLSDF ANKLGLPFEF 480 FGVAEKVGNV DPERLNVSKA EAVAVHWLQH SLYDVTGSDT NTLWLLQRLA PKVITVVEQD 540 LSNTGSFLGR FVEAIHYYSA LFDSLGSSYG EESEERHVVE QQLLSREIRN VLAVGGPSRT 600 GEPKFHNWRE KLQQCGFRGI SLAGNAATQA SLLLGMFPSE GYTLVEDNGI LKLGWKDLCL 660 LTASAWRPPY TTAMAHHHS

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MAACALFTGA SNNTAEDGNV STTTTTTNGA AAAGSGSSPL TSASSNISAS EEQQQQQHML  60
LLHGTSGFMN QPHCFLVEPP TTSTPPLSFK RAPQLVQFAD SPIRNNSANI VEVVTSSPSS  120
MDESSAASNW IDGILKDLIH SSNSVSIPQL INNVREIIYP CNPNLAMLLE YRLRLLTSDS  180
SSAAVPAAPP PPPPPQNKTP VMKQTNTSNM HAYGAIHFQD SSLNQYWPVV PPTPLDSNNN  240
NSVSLANTLP SPPPPPPPPQ PPQQEKPEED LVTAPATTTS TATATEMAVL TRKKTEEMNQ  300
QKKKDEEGLH LLTLLLQCAE AVSAENLEDA NKMLLEISQL STPFGTSAQR VAAYFSEAIS  360
ARLVSSCLGI YATLPIVPHS QKVASAFQVF NGISPFVKFS HFTANQAIQE AFEREERVHI  420
IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMEAL EATGKRLSDF ANKLGLPFEF  480
FGVAEKVGNV DPERLNVSKA EAVAVHWLQH SLYDVTGSDT NTLWLLQRLA PKVITVVEQD  540
LSNTGSFLGR FVEAIHYYSA LFDSLGSSYG EESEERHVVE QQLLSREIRN VLAVGGPSRT  600
GEPKFHNWRE KLQQCGFRGI SLAGNAATQA SLLLGMFPSE GYTLVEDNGI LKLGWKDLCL  660
LTASAWRPPY TTAMAHHHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	294	668	3	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.J7N5K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025695914.1	0.0	protein SCARECROW
Swissprot	Q9AVK4	0.0	SCR_PEA; Protein SCARECROW
TrEMBL	A0A445DE66	0.0	A0A445DE66_ARAHY; Uncharacterized protein
STRING	GLYMA18G45220.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein