PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.J8H2F

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 400aa MW: 43493.3 Da PI: 8.545

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.J8H2F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.3e-40	61	120	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Aradu.J8H2F 61 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 120 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	59	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDGWMEPSKR ELTSTQDKET TEDLKSPTTT SSGIFENPKT PTNGGEQSET SVSQEKTPKK 60 PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS 120 AASHYRQIMV PEALQAAHLN APSGLHNAVL TFGPDSPLCD SMSSVLNIAG KATNGVVNGF 180 HAPEAATTFV SYGRDDDGND HSVGVSGTTS TSSERRGHAS SHESADKRVE SFPPQLTYFP 240 SNSPWPYPWN SPMPPPPTFC PPGYPMSIYT TPSYWQWNVP CISPQSPAPG SGPNSPLGKH 300 SRDGNIITPA NSQKEKPNTE SNNVLIPKTL RIDDPSEAAK SSIWSTLGIK NEKANSLNGG 360 GLFKAFPSKG NDKSHVVEAS PMLHANPAAL TRSLTFHERT

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDGWMEPSKR ELTSTQDKET TEDLKSPTTT SSGIFENPKT PTNGGEQSET SVSQEKTPKK  60
PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS  120
AASHYRQIMV PEALQAAHLN APSGLHNAVL TFGPDSPLCD SMSSVLNIAG KATNGVVNGF  180
HAPEAATTFV SYGRDDDGND HSVGVSGTTS TSSERRGHAS SHESADKRVE SFPPQLTYFP  240
SNSPWPYPWN SPMPPPPTFC PPGYPMSIYT TPSYWQWNVP CISPQSPAPG SGPNSPLGKH  300
SRDGNIITPA NSQKEKPNTE SNNVLIPKTL RIDDPSEAAK SSIWSTLGIK NEKANSLNGG  360
GLFKAFPSKG NDKSHVVEAS PMLHANPAAL TRSLTFHERT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.J8H2F

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	8e-66	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956917.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	2e-86	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445DNU3	0.0	A0A445DNU3_ARAHY; Uncharacterized protein
STRING	XP_004505416.1	1e-167	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-79	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]