PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.JA996

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 191aa MW: 21568.4 Da PI: 8.4988

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.JA996	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230.7	3.6e-71	2	163	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++ ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++ll+vn+ + q l ++ ++++++l +ee++ + +++s+ ++ Aradu.JA996 2 ETMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQ----EYHHQKQHLSFEESSSCKELGSSSSKCNK--IA 93 567899**************************************999998877665554....34445555555554443333333333333..33 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ e++++pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aradu.JA996 94 PFEPVESHQSPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163 456677889999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-73	6	163	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	107	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	111	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
METMMATERV CYVHCNFCNT ILAVSVPYSS LLTLVTVRCG HCANLLTVNM GASLQPLIPP 60 HQEYHHQKQH LSFEESSSCK ELGSSSSKCN KIAPFEPVES HQSPRIPPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKMDGNND KQAKLDHNNG 180 EGTQKSNNGF Y

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.JA996

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015953209.1	1e-143	putative axial regulator YABBY 2 isoform X2
Refseq	XP_025687292.1	1e-143	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445E1E9	1e-142	A0A445E1E9_ARAHY; Uncharacterized protein
STRING	GLYMA12G10210.3	8e-97	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-66	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]