PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JHS4N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 541aa    MW: 60655.8 Da    PI: 8.6096
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JHS4NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.7e-2175166191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY +YAk  GF  rk+ ++  + ng+i +r++vC+k g+r+ ++ k ++++r++ra tr++Cka+++  +++ +gkw+v+ +e+eHnH+l+p
  Aradu.JHS4N  75 EFYAKYAKCYGFVSRKDLKTV-DANGNINTRQLVCNKAGERRWKHLKrDNRQREHRAITRVNCKARIRFIRHYrTGKWKVSVFESEHNHPLCP 166
                  6***********998886555.69999*************99887664789999**************888877*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1975166IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.297212250IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-4225252IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MENDGKESYK DGDQSEDLSV EYECSSDESD DMVDVTVDEA EADIINAGGL EKLITDLTIE  60
DIWGLAFDTE SQVCEFYAKY AKCYGFVSRK DLKTVDANGN INTRQLVCNK AGERRWKHLK  120
RDNRQREHRA ITRVNCKARI RFIRHYRTGK WKVSVFESEH NHPLCPPKYR HLIAVNRGLD  180
EADKTQADSL RACGVKTCHI MGYMFPVLTT CLESFEKQAA ELYTRKCECR LFETRGLPCS  240
HIFGVLKHRN ANCVPTSLIL KRWTRDAKSD FICSIGEQDA ADDIAPTLRR GAMASICWKL  300
CDISSKNSAN YREISGELLK LISKVQNKGD AQVRLSPTSA LIGDPAVVKS KGAPRKVPKG  360
QKRRRCSHCK SGRHFVRTCP LLAKEDSPAE YSNAEDEPMG YGSKKSVSKL TETPKIRANG  420
KKNRQKTEEI SLSEETLKAK TNTSGIEATE VPDAATTKIP GLPQYPMHHY PVVLPYQPYG  480
GVLPIPFHPV PNGMAYFNQY PSTAGITSYP QFSHVSSYSS GPRDSNTWAG LLNDIINNKK  540
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357363PKGQKRR
2420426KKNRQKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JHS4N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025608154.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445CHF40.0A0A445CHF4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-18FAR1 family protein