PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.JM25Q

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 178aa MW: 20280.6 Da PI: 6.2398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.JM25Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.7e-16	51	135	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+e k +++ + +++ +++ +C ++ ++ k g w +++++l+H+H++ Aradu.JM25Q 51 KFYRNYAKAAGFSTRVRSTNRK--ENEIKNQLITCSREEKWKSKISL---TEKANPTAGLNCPTRIYIHTLKdVGAWIISNVVLDHSHPC 135 6**************98887..7779********9998877...8899999*******998879************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	51	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAE KFYRNYAKAA 60 GFSTRVRSTN RKENEIKNQL ITCSREEKWK SKISLTEKAN PTAGLNCPTR IYIHTLKDVG 120 AWIISNVVLD HSHPCKCHKE EENKSFKRVV HSNSSQYQGH VMNYQFRVPA AGDNSLDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.JM25Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-124	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020992539.1	7e-85	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997160.1	4e-85	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445DSM5	1e-90	A0A445DSM5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-09	FAR1 family protein