PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JNA0U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 326aa    MW: 36245.4 Da    PI: 9.1698
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JNA0UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32173229158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  Aradu.JNA0U 173 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGNGGRF 229
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.3E-37171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.841172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-27174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-24175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPGKPESDEW RAKRSQQIQF QASIYAQPWW RGGAGENSPK SSSVDQQLNG SSAMNGGTIT  60
TQSETNEVVG FNKQMQSLIS QSLPGIDNSG EDVTKEHQNI KHAFSSTPFT MVKHLGPNSE  120
NESIGHSIVL TSQAYFDAHY GGGLTPYGQQ TMINPQLYGM NHARMLLPLE MEEEPVYVNA  180
KQYHGILRRR QSRAKAELEK KVIKVRKPYL HESRHLHAMR RARGNGGRFL NTKKLEGNNN  240
NSINPSMESG SSLSTATLHS NNDHYVVSQS MVHDMEKMQN FTIGFHGSNG LSSMYHSQFN  300
GRNEGHCFGG ERQGMLMHGA PNGAIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20173253275NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JNA0U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937254.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_020985362.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_020985363.10.0nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLA0A445BZV40.0A0A445BZV4_ARAHY; Uncharacterized protein
STRINGGLYMA12G36540.61e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-36nuclear factor Y, subunit A1