PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JUH3U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 491aa    MW: 55998.1 Da    PI: 8.714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JUH3UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.4e-1788174191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++ +++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.JUH3U  88 KFYRNYAKVAGFSTRVRSINRK--GNEIKNQLITCSREGKWNSKISP---TEKTNSTAGLNCPARIYIHTLKdVGAWIISKIVLDHSHPCCP 174
                  6****************99887..8889*************998877...8899999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1588174IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.137337373IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5338370IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017348375IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDDSTSYSQL NQGKWIMNLN LTKFLRRSGV DQNFFGCICF GSVGVFTHVC LQLMAFIVIL  60
VELPLSVVDD QFVSKVGMTF TTLEDAGKFY RNYAKVAGFS TRVRSINRKG NEIKNQLITC  120
SREGKWNSKI SPTEKTNSTA GLNCPARIYI HTLKDVGAWI ISKIVLDHSH PCCPSKAEML  180
KQHRELSMSI RRTIENNEEA DLYEGHHILV PIYLDHHFWA GMRSTQRSES MHSFFNKFIT  240
HNSSFIQFVK QYDNCVGSRE QAERESDAAD FHTVIPCATK SSIEALFQDV YTHQKFREVQ  300
AQFRGKVNCI TILTNSALGY LVYEVGKQVF SSIFNKFVVT YDSVAAEIKC QCLLFESRGI  360
LCRHALSVLS FEQSSHDEPL LEPRSKRFVQ LVFRSQNICE FASESEELTT ILYRAYDNVM  420
AEMESLKAKR KGTSYLSHED ANLESVNELQ SPPRIQTRGR PKNKLGSKLD KQIANATKKK  480
KTKVLSEINL F
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JUH3U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-177protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-21far-red elongated hypocotyls 3