PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.K087N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 407aa    MW: 44298.2 Da    PI: 9.5125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.K087NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12335380655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Aradu.K087N 335 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 380
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16332393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-12333382No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14334391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-11335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDSNSLQGYQ LEQQQSSSSG LLRYRSAPSS LLANLTPTFT ESQTLLSRFA NSNSSSSKNN  60
ISKTDTVSHS FQEFPDTNTN TKPTNKGCDS KGLRRMNSGG HGYGGGGLPP HYPRNTSSSS  120
CSSSMDGFLG LVMGSMGMDQ KGFGVSSSLN LLRQNSSPAD LFSNVSFQNG FATMKGVGNY  180
GHVNSTSEEL SPSMNRLKNQ ISFSSRTASS LGMLSQISEI GSEEIGANSP DDGRQGGSNG  240
DALHYSPGFS YGSWNDAPQQ SENLTGLKRG RSSNGKLFPD VQNGELGNQV HMLSHHLSLP  300
KTSSEMIGME NLLQFPDSVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD  360
KQTNTADMLD LAVDYIKDLQ KQFKNLSEKR ANCKCISMRR ADTNQIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.K087N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949836.10.0transcription factor bHLH130
TrEMBLA0A445EDF40.0A0A445EDF4_ARAHY; Uncharacterized protein
STRINGGLYMA02G29830.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-80bHLH family protein