PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.K0FA0

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 502aa MW: 56898.7 Da PI: 7.8509

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.K0FA0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.3	4.6e-32	85	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r e++k+ + + +r+raetr+gCka+l+vk + +g+w+v+++++eHnHel+p Aradu.K0FA0 85 FYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMEKEKNslDGRVKRPRAETRVGCKAMLVVKIQVSGRWVVSSFVKEHNHELVP 176 9***************************************999988889999**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-30	85	176	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.571	290	326	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-8	298	324	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.8E-7	301	328	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MEFESLSLAN EVIEFDMIGL GDDGAIDIEH HVEDDDDYIS VDNVFAATAA TNIAATVGPQ 60 IPIGDTNLEP YQGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK 120 EGFRMEKEKN SLDGRVKRPR AETRVGCKAM LVVKIQVSGR WVVSSFVKEH NHELVPPDKV 180 HCLRSHRHVS GPAKSLIDTL QGAGIGPSGI MSALIKEYGG ISNIGFTERD FLNTPSPMEK 240 QAAGIYTKRL FIKFQEELVE TLTYLANKVG EEEITSVYRV AKYGDIHRAY FVRFNSFEMK 300 VTCSCQMFEF LGLVCRHILT VFRVTNILTL PSHYILKRWT RNAKSGVILD EHTPDLLNGA 360 RESLTIRYNN LRHEALKYVD DGIRSPRVYD VAMSALQEAA NKVARATKND GRLVISNGTY 420 KEDLRWNNEA TTSYRDPQTS LQQSSSKDDH DRTIEKLTRQ LDRAQRKCEV YRSNLLSILK 480 DMEEQKLELS VKVQNIKLGM KD

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MEFESLSLAN EVIEFDMIGL GDDGAIDIEH HVEDDDDYIS VDNVFAATAA TNIAATVGPQ  60
IPIGDTNLEP YQGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK  120
EGFRMEKEKN SLDGRVKRPR AETRVGCKAM LVVKIQVSGR WVVSSFVKEH NHELVPPDKV  180
HCLRSHRHVS GPAKSLIDTL QGAGIGPSGI MSALIKEYGG ISNIGFTERD FLNTPSPMEK  240
QAAGIYTKRL FIKFQEELVE TLTYLANKVG EEEITSVYRV AKYGDIHRAY FVRFNSFEMK  300
VTCSCQMFEF LGLVCRHILT VFRVTNILTL PSHYILKRWT RNAKSGVILD EHTPDLLNGA  360
RESLTIRYNN LRHEALKYVD DGIRSPRVYD VAMSALQEAA NKVARATKND GRLVISNGTY  420
KEDLRWNNEA TTSYRDPQTS LQQSSSKDDH DRTIEKLTRQ LDRAQRKCEV YRSNLLSILK  480
DMEEQKLELS VKVQNIKLGM KD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.K0FA0

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025651516.2	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_025698166.2	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	5e-87	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A200PR76	1e-166	A0A200PR76_9MAGN; FAR1 DNA binding domain
STRING	GLYMA11G09400.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-89	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]