PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.K1DDT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 494aa    MW: 56308.3 Da    PI: 9.3988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.K1DDTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.14.5e-1651137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+ +++k+   ++i+++  +Cs+egk +++ +    +++t+++   +C  ++ ++  k  g w +++++l H+H+++p
  Aradu.K1DDT  51 KFYKDYAKAAGFSTRVWTTNKK--GNKIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPTRIYIHTLKdIGAWIISNVVLYHSHPCCP 137
                  6***************998877..77799************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1351137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.062281317IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-4288314IPR007527Zinc finger, SWIM-type
SMARTSM005750.002292319IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDYSTSDCQL NQGEVDFEFE SNEVLESLCV VDDQFVPKVG MTFNTLEDAA KFYKDYAKAA  60
GFSTRVWTTN KKGNKIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPTR IYIHTLKDIG  120
AWIISNVVLY HSHPCCPTQA EMLKQHMELS MSVCRTIEKT RKLAGMKSTQ RSESMHSFFN  180
KFITRNNSLI QFVKQYDNCL GSREQAERES DAADFHTVIP CATKSSIEAQ FQHVYTHQKF  240
REVQAQLRRK ANCITRLTNS ALGYSVYEVG EQVSSSIFNK FVVTYNSVAA QVKCQCSLFE  300
SRGILCHHAL SVLSFKRVTQ LSPRYILERW SKKGNRQLTH IKSSHDEPLL EPRSKRFDEL  360
VFCSQNICEF TSKSEELTAI LHRAYGNIMV EMGELKAKRK GTCLLSHEDA NLESINELQS  420
PPRVRTRGRP KNRLGSKLDK QIENVSKKKK TKALNELNLF DAVSVVHPNS SQYQGHVMNY  480
QFRKLAVGDS FLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.K1DDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954109.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-24far-red elongated hypocotyls 3