PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.K4U8Y

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 251aa MW: 26713.4 Da PI: 5.8472

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.K4U8Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	6.8e-06	36	70	2	35
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAk 35 r+R+t+++eq+ +Le+ F++ +p ++e ++ k Aradu.K4U8Y 36 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRK 70 89*****************9899999999888766 PP
2	Wus_type_Homeobox	63.5	4.3e-21	35	82	2	49
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+N Aradu.K4U8Y 35 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDAN 82 589*******************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEEQGQQHHQ DPNRSHSHGA GGSSSSSEKQ SSEPVRSRWT PKPEQILILE SIFNSGMVNP 60 PKDETVRIRK LLEKFGAVGD ANDHPGQPAL SVGSSLGFGG SSSFGDSSSC SFHLPPPPTG 120 AVGGSSSSSS SFGGEQEAMD NFFSGVPPPH HHTPQMGFQE FDHTSSLFPH VPPNFTYNSG 180 FGGNNVSGFI TVFINGIATE VPRGLIDIKT LFGEDAILVH SSGVPLPTNE FGFLIQTLQH 240 GESYFLVPKP T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.K4U8Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020980607.1	1e-127	WUSCHEL-related homeobox 11-like isoform X1
Swissprot	Q6X7J3	9e-59	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A445CS56	1e-122	A0A445CS56_ARAHY; Uncharacterized protein
STRING	GLYMA19G29660.2	2e-71	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-26	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]