PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.K7TJG

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 400aa MW: 44153.5 Da PI: 7.1448

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.K7TJG	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GGa+rnvPvG+grrknk+s Aradu.K7TJG 106 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGAMRNVPVGAGRRKNKNSA 166 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	98	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	107	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MKMVDNKDPA ITLFGKKIPF PGEAALNAAE LEDDEVDKQV GHKDGGADEV TEKKKEADPS 60 RNGNAEINKR KDWSVQNPKT PSIEEESAKI KKEQSDAEQE KAVKKPDKVL PCPRCKSMDT 120 KFCYYNNYNV NQPRYFCKAC QRYWTAGGAM RNVPVGAGRR KNKNSASASH YRHITISDGT 180 LKSSGRVLSF GLDTPPPPIC DSMASVLNGF HGIEDQSGEN GDDCSSGSSI TMEETGKTAS 240 QEPLAQSPPQ VPCIPSVPWP YPWNSALCPP GFPISFYPAP FWNWNVPWFP SHPSTLGKHS 300 RDDADDDTVK QDYRQKEEPP RQRNGCVLVP KTLRIDDPSE AAKSSIWATL GIKNECVIGG 360 GMFKAFQSNK EEKNKVVETS PVLLANPAAL SRSLHFHENS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MKMVDNKDPA ITLFGKKIPF PGEAALNAAE LEDDEVDKQV GHKDGGADEV TEKKKEADPS  60
RNGNAEINKR KDWSVQNPKT PSIEEESAKI KKEQSDAEQE KAVKKPDKVL PCPRCKSMDT  120
KFCYYNNYNV NQPRYFCKAC QRYWTAGGAM RNVPVGAGRR KNKNSASASH YRHITISDGT  180
LKSSGRVLSF GLDTPPPPIC DSMASVLNGF HGIEDQSGEN GDDCSSGSSI TMEETGKTAS  240
QEPLAQSPPQ VPCIPSVPWP YPWNSALCPP GFPISFYPAP FWNWNVPWFP SHPSTLGKHS  300
RDDADDDTVK QDYRQKEEPP RQRNGCVLVP KTLRIDDPSE AAKSSIWATL GIKNECVIGG  360
GMFKAFQSNK EEKNKVVETS PVLLANPAAL SRSLHFHENS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.K7TJG

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937868.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-111	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445C2D1	0.0	A0A445C2D1_ARAHY; Uncharacterized protein
STRING	GLYMA04G33410.2	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-106	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]