PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KAZ0G
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18387.1 Da    PI: 10.26
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KAZ0GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.91.9e-26958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i+fs+tgkl+ y 
  Aradu.KAZ0G  9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFRYF 58
                 79********************************************9995 PP
2K-box37.69.4e-1483145971
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                   +++++e l +e+a L+ ++ +L+  + ++lGe++  L+++eL qLe+++++s+ ++R+  ++
  Aradu.KAZ0G  83 GHSHHQEDLLTEMAMLRHQNLSLEMGIQRYLGEGIACLQYEELTQLEDEVQSSVARVRTGTKQ 145
                  4667888999************************************************86555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.81161IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-32288IPR002100Transcription factor, MADS-box
CDDcd002655.97E-40276No hitNo description
PRINTSPR004049.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-1084147IPR002487Transcription factor, K-box
PROSITE profilePS512978.49688159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIVFSN TGKLFRYFSH  60
PYRMDQIIEK YQRSTGTRIT PHGHSHHQED LLTEMAMLRH QNLSLEMGIQ RYLGEGIACL  120
QYEELTQLED EVQSSVARVR TGTKQAQKQR TRIPTLTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19171169MEF2C
5f28_B1e-19171169MEF2C
5f28_C1e-19171169MEF2C
5f28_D1e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KAZ0G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988400.13e-96MADS-box protein GGM13 isoform X2
RefseqXP_020988401.13e-96MADS-box protein GGM13 isoform X2
RefseqXP_020988402.13e-96MADS-box protein GGM13 isoform X2
SwissprotQ9ATE53e-46FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A444YPE85e-84A0A444YPE8_ARAHY; Uncharacterized protein
STRINGXP_004498126.11e-63(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.14e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]