PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.KP3H1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 465aa MW: 53425 Da PI: 9.879

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.KP3H1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.4	1e-17	44	130	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k++l+H+H+++p Aradu.KP3H1 44 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKLKSKISP---TEKTNPTAGLNCPARIYIHTLKdVDAWIISKVVLDHSHPCCP 130 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-15	44	130	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	293	329	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	295	326	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	304	331	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MVYSAACVLT VYGFKSHSVP LSVVDDELVL KVGMTFTTLE DAGKFYRNYA KAAGFSTRVR 60 CTNRKGNEIK NQLITCSREG KLKSKISPTE KTNPTAGLNC PARIYIHTLK DVDAWIISKV 120 VLDHSHPCCP SKAEMLKQHR ELSMSIRRTI ENNEEADLYE DRHIWVPIYL DHHFWAGMRS 180 TQRSESMHSF FNKYITRNSS LIQFVKQYNN CLGSREQAER ESDAADFHMV IPCATKSSIE 240 AQFQDAYTHA KFRKVQAQFR GKANCITRLK NSALGYSVYE VGEQVSSSIF NKFVVTYDSV 300 AAEVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE RWSKKVKRRH THIKSSHDEP 360 LMEPRSKRFD QLVFRSQNIC EFASESEELT AILHRAYDNV MAEMESLKAK RKGISSLSHE 420 DANLESVNEL QSPPRIRTRG RPKNRLGSKL DKQIANTTKR RRRKF

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MVYSAACVLT VYGFKSHSVP LSVVDDELVL KVGMTFTTLE DAGKFYRNYA KAAGFSTRVR  60
CTNRKGNEIK NQLITCSREG KLKSKISPTE KTNPTAGLNC PARIYIHTLK DVDAWIISKV  120
VLDHSHPCCP SKAEMLKQHR ELSMSIRRTI ENNEEADLYE DRHIWVPIYL DHHFWAGMRS  180
TQRSESMHSF FNKYITRNSS LIQFVKQYNN CLGSREQAER ESDAADFHMV IPCATKSSIE  240
AQFQDAYTHA KFRKVQAQFR GKANCITRLK NSALGYSVYE VGEQVSSSIF NKFVVTYDSV  300
AAEVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE RWSKKVKRRH THIKSSHDEP  360
LMEPRSKRFD QLVFRSQNIC EFASESEELT AILHRAYDNV MAEMESLKAK RKGISSLSHE  420
DANLESVNEL QSPPRIRTRG RPKNRLGSKL DKQIANTTKR RRRKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	458	463	KRRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.KP3H1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	7e-36	far-red elongated hypocotyls 3