PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KQ6RZ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 452aa    MW: 51162.1 Da    PI: 9.474
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KQ6RZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.54.6e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++  ++C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.KQ6RZ  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.902232268IPR007527Zinc finger, SWIM-type
PfamPF044345.7E-4241265IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-4243270IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGVNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN NEAGIRPSKT YQSFVAAAGA  180
QFQDAYTHAK FREVQAQFRR KANCITRLKN SALGYSVYEV VEQVSSSIFN KFAVTYDSVA  240
AEVKCQCLLF ELRGILCHHA LSVLSFEQVS QVSPRYILER WSKKVKRRHT HIKSSHDEPL  300
MEPRSKRFDQ LVFRSQNICK FASESEELTA ILHRAYDNAM AEMEALKAKR KGTSSLSHED  360
ANLESVNELQ SPPRIRTRGR PKNRLGSKLE KQIANATKKK TKVLSDLMRE CYIQINLFDA  420
ASAAHSNSSQ YQGHVMNYQF RVPAAENNSL GV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KQ6RZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-165protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445E9M10.0A0A445E9M1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-13far-red elongated hypocotyls 3