PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.KU195

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 612aa MW: 68663.2 Da PI: 7.4249

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.KU195	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.3e-19	71	159	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 Y+e+A++ GF vrk + +g +kr+f C ++g+r++++ + e+ r++r e+rt+Ckaklk+ + +++w+v ++ eHnHel+p Aradu.KU195 71 YKEFARTRGFGVRKGDVGRV--DGVLVKRDFFCHRQGTRHPKHYDrPERVREERLESRTDCKAKLKIYYDVqRSVWKVRTIFDEHNHELTP 159 9************99998..***************999856778889***********99989*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-17	70	159	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.359	316	352	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.9E-6	327	354	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MNFNGMFGGE VEESDENSSD GYCGRYYTSD DEGEEDEGGE DCGGEEGDPT VVAEDFLGRE 60 FVGEEDVYLV YKEFARTRGF GVRKGDVGRV DGVLVKRDFF CHRQGTRHPK HYDRPERVRE 120 ERLESRTDCK AKLKIYYDVQ RSVWKVRTIF DEHNHELTPA MFSHLLPSHR KMSNGDKAQV 180 DSMKKFGIPT SKVMAYMTGQ SGGTTSKCEG INAYIKGFLK STDSILELVH NLDRVVKDYR 240 NNEVTVQFYS TYYSPVLTTG LDSIELFASK LYTREVFRKV KKQIKGVVTL LFRGRDSIST 300 TVVYKFSRMG APSRIHKVLF DPDDKKIQCD CSMWNSEGIP CSHIFCVMKY EGLEQIPNSL 360 IMRRWCKDAK DSSRMPVTMK PGHEGRMLRR SAKYVGVEPD KGPGCRKNKK VPLRGRRSST 420 QAVNPMSKGR DVAAPNVAFH GIQRGHAAGT VHEDQTSTHG EGGLNNVSSS VVNTSSMVNR 480 KGSPSWRLPF CGGGSGGTFF LGGQHIYQFY ASQPCSGHQS ELPPHKGHCS MSTPTRETNE 540 DLFERWLLQC GGGYSVSAGS EHAALEISPL YYEESDHDNL VPSSLTGAWL VEVICFVDTD 600 SQAERQMQDH LK

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MNFNGMFGGE VEESDENSSD GYCGRYYTSD DEGEEDEGGE DCGGEEGDPT VVAEDFLGRE  60
FVGEEDVYLV YKEFARTRGF GVRKGDVGRV DGVLVKRDFF CHRQGTRHPK HYDRPERVRE  120
ERLESRTDCK AKLKIYYDVQ RSVWKVRTIF DEHNHELTPA MFSHLLPSHR KMSNGDKAQV  180
DSMKKFGIPT SKVMAYMTGQ SGGTTSKCEG INAYIKGFLK STDSILELVH NLDRVVKDYR  240
NNEVTVQFYS TYYSPVLTTG LDSIELFASK LYTREVFRKV KKQIKGVVTL LFRGRDSIST  300
TVVYKFSRMG APSRIHKVLF DPDDKKIQCD CSMWNSEGIP CSHIFCVMKY EGLEQIPNSL  360
IMRRWCKDAK DSSRMPVTMK PGHEGRMLRR SAKYVGVEPD KGPGCRKNKK VPLRGRRSST  420
QAVNPMSKGR DVAAPNVAFH GIQRGHAAGT VHEDQTSTHG EGGLNNVSSS VVNTSSMVNR  480
KGSPSWRLPF CGGGSGGTFF LGGQHIYQFY ASQPCSGHQS ELPPHKGHCS MSTPTRETNE  540
DLFERWLLQC GGGYSVSAGS EHAALEISPL YYEESDHDNL VPSSLTGAWL VEVICFVDTD  600
SQAERQMQDH LK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.KU195

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025692559.1	1e-170	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445DWX1	1e-172	A0A445DWX1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16635	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-19	FAR1-related sequence 5