PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KW28B
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 315aa    MW: 35706.7 Da    PI: 9.2167
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KW28BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.5e-1838124191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++++    +++ +++  ++C a++ ++  k  g w ++k++l+H+H+ +p
  Aradu.KW28B  38 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKTSP---TEKINPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPYCP 124
                  6***************998776..8889*************998766...88899999**********998879**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1538124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGVFTVLTRC IVQPLSVVDD ELVPKVGMTF TTLEDAGKFY RNYAKAAGFS TRVRCTNRKG  60
NEIKNQLITC SREGKWKSKT SPTEKINPTA GVNCPARIYI HTLKDVGAWI ISKVVLDHSH  120
PYCPSKAEML KQHRELSISI RRTIENNDEA GMRSTQRSES MHSFFNKYIT RNSSLIQFVK  180
QYDNCLGSRE QAERESDAAD FHTVIPCATK SSIETQFQDA YTQAKFREVQ AQFRGKVNCI  240
TRLKNSALGY SVYEVGEQVS SSIFNKFAVT YDSVAAEVKF QCLLFESRGI LCRHALSVLS  300
FEQVSQVSPR YILER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KW28B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997348.11e-116protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
STRINGXP_004490233.13e-39(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-24far-red elongated hypocotyls 3