PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.LCZ5W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 208aa MW: 23497.6 Da PI: 7.422

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.LCZ5W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6.1e-19	74	160	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.LCZ5W 74 KFYRNYAKAAGFSTRVQCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPARIYIRTLKdVGSWIISKVVLDHSHPCCP 160 6*************988776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-16	74	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEIQKR IEEMVSAGLD TSSLEIYIYP LSVVDDELVS 60 KVGMTFTTLE DARKFYRNYA KAAGFSTRVQ CTNRKGNEIK NQLITCSREG KWKSKISPTE 120 KTNPTASLNC PARIYIRTLK DVGSWIISKV VLDHSHPCCP SKAEMLKQHR ELSMSIRRMI 180 ENNDEAGIRP SKTYQSFVAA AGGHRELN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.LCZ5W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997266.1	1e-121	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YP48	1e-124	A0A444YP48_ARAHY; Uncharacterized protein
TrEMBL	A0A444ZXU6	1e-122	A0A444ZXU6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-13	FAR1-related sequence 5