PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LG4K6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ZF-HD
Protein Properties Length: 197aa    MW: 20847 Da    PI: 6.5107
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LG4K6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer55.99.8e-185794341
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaal 41
                 +vrY+eC+kNhA+s+GghavDGC+Ef+++ g egt +a 
  Aradu.LG4K6 57 AVRYRECQKNHAVSIGGHAVDGCCEFLAA-GGEGTLEAH 94
                 79**************************9.777776664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-155893IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-105893IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.22860113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.3E-21120195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-33121196IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-26134190IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEFDEHEDQE EEEMGIPEPP PAPQGYDSFG NSAARSKSEG GGGGAAAVTP GRKGGTAVRY  60
RECQKNHAVS IGGHAVDGCC EFLAAGGEGT LEAHRPLALP AAASGGGGFY KEEEDMSNPS  120
SSGGGGGGSG SGTKKRFRTK FTQEQKDKML AFAEQLGWRI QKHDESAVEN FCAETGVKRH  180
VLKVWMHNNK HTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-311331921675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LG4K6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732217.18e-76PREDICTED: zinc-finger homeodomain protein 2 isoform X3
SwissprotQ9SB611e-55ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2P5PYG77e-74A0A2P5PYG7_GOSBA; Uncharacterized protein
STRINGXP_010266504.12e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-50homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]