PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LG4RX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 218aa    MW: 25202.5 Da    PI: 9.6191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LG4RXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM821.2e-25161431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkg 97 
                  lp+G+rF P+de  v++yLk+k+ +k+l++ +v++ +d++++eP++Lp+  k   +  yf++  +++  ++ +++  + +g Wk  gk ++e+l++++
  Aradu.LG4RX  16 LPVGYRFCPSDEVFVSCYLKNKALSKTLDF-DVVPVFDVFNTEPKNLPSGGKVFLETKYFYFDLKERVFED-NNKIEAGKGHWKRVGKgNQELLNNNN 111
                  799**************************9.99***************53333333445555555544443.33336689*******97778888899 PP

          NAM  98 elvglkktLvfykg.rapkgektdWvmheyrl 128
                  +l+g k+ +vf+++ ++ +  kt+Wvm e+r+
  Aradu.LG4RX 112 KLIGFKTKFVFWRKkNRTQFLKTKWVMFEFRV 143
                  9***********662445557*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-298162IPR003441NAC domain
PROSITE profilePS5100529.55316162IPR003441NAC domain
PfamPF023657.0E-1417143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDNRLATNSS YASLRLPVGY RFCPSDEVFV SCYLKNKALS KTLDFDVVPV FDVFNTEPKN  60
LPSGGKVFLE TKYFYFDLKE RVFEDNNKIE AGKGHWKRVG KGNQELLNNN NKLIGFKTKF  120
VFWRKKNRTQ FLKTKWVMFE FRVFLNPSQI MSSWAGYKIY LKKDKRRNKK AKFSCEESSD  180
DDEEEAERAS EVNFADEISG INTGPPSPTS SNESSVTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-141216313166NO APICAL MERISTEM PROTEIN
1ut4_B5e-141216313166NO APICAL MERISTEM PROTEIN
1ut7_A5e-141216313166NO APICAL MERISTEM PROTEIN
1ut7_B5e-141216313166NO APICAL MERISTEM PROTEIN
3swm_A7e-141216316169NAC domain-containing protein 19
3swm_B7e-141216316169NAC domain-containing protein 19
3swm_C7e-141216316169NAC domain-containing protein 19
3swm_D7e-141216316169NAC domain-containing protein 19
3swp_A7e-141216316169NAC domain-containing protein 19
3swp_B7e-141216316169NAC domain-containing protein 19
3swp_C7e-141216316169NAC domain-containing protein 19
3swp_D7e-141216316169NAC domain-containing protein 19
4dul_A5e-141216313166NAC domain-containing protein 19
4dul_B5e-141216313166NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166LKKDKRR
2161169KKDKRRNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LG4RX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971232.11e-160NAC domain-containing protein 83
TrEMBLA0A444YSF31e-156A0A444YSF3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-16Arabidopsis NAC domain containing protein 87