PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.LH6E2

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 132aa MW: 14820.8 Da PI: 7.3841

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.LH6E2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.5	5.3e-19	39	125	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+eg+ +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.LH6E2 39 KFYRNYAKVTGFSIRVQSTNRK--GNEIKNQLITCSREGTWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 125 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-16	39	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MVDSTSDFQL NQGEVDYEFE SNEVPEVGMT FTTLEDAGKF YRNYAKVTGF SIRVQSTNRK 60 GNEIKNQLIT CSREGTWKSK ISPTEKTNPT AGLNCPARIY IHTLKDVGAW IISKVVLDHS 120 HPCCPSKAEM LK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.LH6E2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-136	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997160.1	3e-81	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020997362.1	6e-81	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445DUC1	2e-85	A0A445DUC1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-12	FAR1 family protein