PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LW5ZP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 470aa    MW: 52762.6 Da    PI: 8.9728
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LW5ZPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.5e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk vGFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.LW5ZP  51 KFYRNYAKAVGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198257293IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4266290IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4268295IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDPSSSDFVL NPGDVDYEFE SNEVHEHLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAV  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAARSFSSS NNTIIASEAG  180
SKQRESDAAD FHTVIPCATK SSIEAQFQDA YTHAKFREVQ AQFRGKANCI TRLKNSALGY  240
SVYEVGEQVS SSIFDKFAVT YDSVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR  300
YILERWSKKV KRRHTHIKSS HDEPLREPRS KRFDQLVFRS QNICEFASES EELTAILHRA  360
YDNVMAEMEA LKAKRKGTSS LSHEDANLES VNELQSPPRI RTRGRPKNRL GSKLEKQIAN  420
ATKKKKTKVL SEINLFDAAS AAHSSCSQYQ GQVINYQLRV PAAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LW5ZP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445CV520.0A0A445CV52_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-17far-red elongated hypocotyls 3