PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LYC6U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 233aa    MW: 26151.6 Da    PI: 10.2733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LYC6UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1374120455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR++i ++f  L   +P++     kK +K++iL +A+ YIk+L+
  Aradu.LYC6U  74 DHIVAERKRRQEITQRFIALSATIPHL-----KKIDKVSILSEAIAYIKQLK 120
                  5899***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.33570119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-975124No hitNo description
Gene3DG3DSA:4.10.280.107.7E-1775135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1175119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1575137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1376125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSQNSEVRSH QKRLMEEVEI HVSNGGVVQE VGERLSLPKL MMMMMMSKSN SSKSIVNSGN  60
TAKKARRSSS ECLDHIVAER KRRQEITQRF IALSATIPHL KKIDKVSILS EAIAYIKQLK  120
EQGKKLEEES RKKNRTVVES VSLVNKRHDA ACELVEARAL EKQVLIRIHC HGHKAVPQVF  180
SHLTNLDLSI VSTSVLPFGT CAIDITIVAQ MGEKYRASMK DLVQSLRLAI PLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LYC6U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933641.11e-139transcription factor bHLH18-like
TrEMBLA0A445CIP41e-137A0A445CIP4_ARAHY; Uncharacterized protein
STRINGGLYMA07G03051.12e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2379533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-26bHLH family protein