PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.M6FRQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 266aa MW: 31261.2 Da PI: 9.4642

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.M6FRQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	5.6e-09	54	108	2	56
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtra 56 Y+eY++ GF +r+ k+ ++ ++ge+++ t+ C++eg+r+++ + ++++r+++ Aradu.M6FRQ 54 LYEEYSRVRGFGIRQGKKIRN-KKGEFVRFTYLCNREGFRDKKWLQmHHRKREPKI 108 59*************9999.6777*************998773344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-7	54	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEDGFTTVVD NVAGISDAFD GLRRWIMDVT LDMGMEDVET TGVALNDPKQ AACLYEEYSR 60 VRGFGIRQGK KIRNKKGEFV RFTYLCNREG FRDKKWLQMH HRKREPKIIT RYRETLKWYV 120 RVTIVECIET DDICIYVTQK YHRPDRTWNL DIASLPNSLV LPRWSKIARM DICRDRVCNP 180 HIDPEATYRA RVEALLQHCK CFAKVACVRE EDYKTYCQKV VQETNMLEIK NVSLSNKVVS 240 KVGRYSMKKT DFRKVVQVAQ LVRAKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.M6FRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN872551	6e-44	JN872551.2 Lotus japonicus strain MG-20 mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025608732.1	1e-66	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9185	2	37