PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M7ZQ8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 451aa    MW: 51286.8 Da    PI: 9.286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M7ZQ8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.98.9e-1566152191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r ++++k+   ++i+++  +C+++gk +++  +   + +t+++   +  a++ ++  k  g+w ++k++l+H+H+++p
  Aradu.M7ZQ8  66 KFYKDYAKAAGFSTRDRSTNKK--GNKIKNQLITCNRKGKWKSKIFS---TGKTNPTVGLNFPARIYIHTLKdVGTWIISKFVLHHSHPCCP 152
                  6**************9998877..77799*************99888...88999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1266152IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.914244280IPR007527Zinc finger, SWIM-type
PfamPF044349.2E-4251276IPR007527Zinc finger, SWIM-type
SMARTSM005750.004255282IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLQLQIHFIP DVRLSCCRSG VGQDFLGLSC CRSGVDQEFL GPFCVVDDQF VPKVGMTFNI  60
LEDAAKFYKD YAKAAGFSTR DRSTNKKGNK IKNQLITCNR KGKWKSKIFS TGKTNPTVGL  120
NFPARIYIHT LKDVGTWIIS KFVLHHSHPC CPTQAEMLKQ HRELSMEQAE RESDAADFHS  180
VILCATKSSA EAQFQEVYTH QKFREVQAQF RGKANCITRL TNSAIDYSLY EVGEQVSSLI  240
FNKFVVTYDS ITSRVKCQCL LFESRGILCR HALSMLSFER VTQVSPRYIL ERWSKKIKRR  300
HTNIKSSHDE PLLEPRSNRF DKLSEELTAI LHHAYDNVMV EMEELKAKRK GTCSLSYEDA  360
NLEAVNELQS PPRVRTRGHP KNGIANASKK KKTKALNELN LFDAASVFIE PAARDSSFWH  420
RMDMSCDMGR PPITTNGLNS KQVQKSEACP H
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M7ZQ8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-153HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-138protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445BCV50.0A0A445BCV5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.23e-17FAR1-related sequence 4