PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.MEY90

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 174aa MW: 20112.7 Da PI: 8.0077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.MEY90	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45	3.5e-14	46	97	38	91
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Aradu.MEY90 46 EGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 97 5666666555..999************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-11	46	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
ELGIDGSING ETIAHATIGE VSSSFVDEDK IASCSFDPAY KQDQDEGYRM PDKREKIVRQ 60 RAETRVGCRA MILVRKVSSG KWVVTKFVKE HTHPLTPGKG RRDCIYEQYP NEHDKIRELS 120 QQLAIEKKRC AAYKRQLELL FEHIEEHNNS LSKKIQHIVG NVKEIEAEEQ QRHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.MEY90

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	5e-62	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935556.2	1e-124	LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A444Y8K5	9e-90	A0A444Y8K5_ARAHY; Uncharacterized protein
STRING	XP_008222480.1	1e-80	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-66	FAR1 family protein