PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.MF2V4

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 213aa MW: 23853.8 Da PI: 6.348

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.MF2V4	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	163.2	2e-50	10	164	2	167
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvv.tvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +vf+ +e++CyvqC+ C+ il+v vP ts+++ v vrCGhC+++lsvn+ k s l + + s + ++ + +k ++ n + n+ e+a+++v++ Aradu.MF2V4 10 HVFDVPEEICYVQCGLCSSILVVCVPCTSMSMAVlSVRCGHCSTILSVNMIKPSFLPSLVTP---SNQLNIEDGNKISTLNAHNNYNDCEEANNNVTT 104 7899***********************9875538*********9988765444332...223334444444444444444333333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + +++ ++PPek+qr Psayn+fikeei+r+ka+nP+++h+eafs+aaknWa fP+ Aradu.MF2V4 105 -----PFTTDSA----PNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSE 164 .....2233333....28**********************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.1E-52	15	162	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-10	108	181	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.3E-7	114	189	IPR009071	High mobility group box domain
PROSITE profile	PS50118	9.247	119	187	IPR009071	High mobility group box domain
CDD	cd01390	1.41E-5	121	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSSSRTLVRH VFDVPEEICY VQCGLCSSIL VVCVPCTSMS MAVLSVRCGH CSTILSVNMI 60 KPSFLPSLVT PSNQLNIEDG NKISTLNAHN NYNDCEEANN NVTTPFTTDS APNKPPEKKQ 120 RTPSAYNCFI KEEIKRLKAE NPEMAHKEAF STAAKNWANF PPSEYRRGDD EIDEERSTHT 180 PQLANNNKVN IEEGEDRRGR KNLENSMINA PFK

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.MF2V4

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957106.1	1e-158	axial regulator YABBY 4 isoform X1
Refseq	XP_025690524.1	1e-158	axial regulator YABBY 4 isoform X1
Swissprot	Q9LDT3	8e-52	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A444ZVA7	1e-149	A0A444ZVA7_ARAHY; Uncharacterized protein
STRING	XP_007157432.1	4e-67	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-53	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]