PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.MRJ6D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 238aa    MW: 25716.6 Da    PI: 9.444
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.MRJ6DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.25e-403899263
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Aradu.MRJ6D 38 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 99
                 57999*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-262587IPR003851Zinc finger, Dof-type
PfamPF027014.4E-343996IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2644296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDTAQWAQGI GVVKAMEGSS TKACSSSSVL ERRARPVKDQ ALNCPRCNST NTKFCYYNNY  60
SLSQPRYFCK TCRRYWTEGG SLRNVPVGGG SRKNKRSSST PASSPSSSLT NKNPKIIHQG  120
QDLNLAYPPP PPPPPHHHDD SATEFLRSGI NTTTTSRGLN SFMPMSLSDS TMYSTAGFGA  180
PMQEFIKSGG LNFSLEEGFE SGGGGARVLF PSSEEKNTNR TDSTTAGFWN GMLGGASW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.MRJ6D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934386.11e-177dof zinc finger protein DOF3.7
RefseqXP_025612674.11e-177dof zinc finger protein DOF3.7
SwissprotQ433857e-53DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A445BS981e-176A0A445BS98_ARAHY; Uncharacterized protein
STRINGVIT_16s0098g01420.t011e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.36e-41Dof family protein