PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.MVF8Z

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 278aa MW: 30216.2 Da PI: 8.1332

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.MVF8Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.2e-40	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e +r da++slvyeA+ r+rdPvyG++g i+ lqqq+++l+ae+++++ Aradu.MVF8Z 49 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVGEGQRADAANSLVYEANLRLRDPVYGCMGAISGLQQQIQTLQAEVNAVR 146 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Aradu.MVF8Z 147 AE 148 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.142	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-40	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
EVFVILEKER IDEIAKKVKK EGELLLSSSC SESEIERMGR KQSLNTVTPC AACKLLRRRC 60 AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKMLMEVGEG QRADAANSLV YEANLRLRDP 120 VYGCMGAISG LQQQIQTLQA EVNAVRAEIL KYKYREAAAT ATATLISMNH HHHLPSNNNN 180 NQAPIIINNN NDNNAANSSS QQQGISQPPP LPPPPLRPAP PNPSLPSPST VVLSSSLSSS 240 SASSVYNNTP PKTTLSHGSI TSESVPYFAL IIWSNNLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	49	163	11	125	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	49	163	11	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.MVF8Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	4e-36	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015931864.1	0.0	LOB domain-containing protein 15 isoform X1
Refseq	XP_025609627.1	0.0	LOB domain-containing protein 15 isoform X1
Swissprot	Q9AT61	1e-69	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A445C7D4	0.0	A0A445C7D4_ARAHY; Uncharacterized protein
STRING	GLYMA14G38280.2	3e-81	(Glycine max)
STRING	XP_010256944.1	2e-81	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-70	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]