PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N1DAK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 382aa    MW: 43706.2 Da    PI: 4.5243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N1DAKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k y++++d++++++isw+++g++f+++d ++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k+++++         weF++++F kg+k+ll +i+
   Aradu.N1DAK  14 FLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDR---------WEFANDNFVKGQKHLLINIR 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Aradu.N1DAK 102 RRKH 105
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-35898IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-4910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3311103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVAKSGENGC VAPFLQKCYD MVSDPSTDSV ISWTHQGHTF LISDITQFSL TLLPNYFKHN  60
NFSSFIRQLN IYGFRKIDTD RWEFANDNFV KGQKHLLINI RRRKHPHAAD HQKPDNSDEA  120
PANDGLWKEV ENLKSNKNSL MQELVKLRQH QESAENKLLL LTDRLQGMEK HQQQMLSFLV  180
MVVQSPGFMV QLLQPNENNW RMAELGDGNG MIVKYKPPVP ENLKPVVPRS PTFEKQPEPE  240
LSFDGLKDLC ISSEFLKVLM DEKLSPLENH PPFLLPDLPD DGSWEQLFLG SPFLQNTDEA  300
DKPTVSGMEI EPITPEDQTE KSQSFESLIL EMEKTEETDA LELRADGVHL EGSEKLKSLT  360
KQMELLASET DNEEEEEEEG RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231110326129Heat shock factor protein 1
5d5v_B1e-231110326129Heat shock factor protein 1
5d5v_D1e-231110326129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N1DAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957202.10.0heat stress transcription factor A-8
TrEMBLA0A444ZU960.0A0A444ZU96_ARAHY; Uncharacterized protein
STRINGGLYMA05G34450.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.18e-88heat shock transcription factor A8