PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N21E2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family BBR-BPC
Protein Properties Length: 315aa    MW: 35409 Da    PI: 9.9987
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N21E2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind331.32.6e-101103158301
    GAGA_bind   8 e.rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                  + r+   yy+               + ++l   +++++ s++aer a i e ++a+sek++a+a+rd+a+ qrd+a+a+r++a+ erdn+l+al+ +e
  Aradu.N21E2  10 NsRHTIdYYRganspwsmasqhqvtEPNALV--MNKKIRSIMAERRA-ILELEAAISEKNEALAARDEALRQRDEAIAQRDNAIRERDNALAALQNRE 104
                  2466666777888888888765553225666..99********9975.5677777******************************************* PP

    GAGA_bind  89 nslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak..kpkekkak.kkkkksekskkkvkkesa 183
                  ++++++l  g +v +g+k +++  +    +++d ++++++ ++++a+p++  +++a ++++ kk++++k  +pk++k+  k kk +e+ +++ ++e+ 
  Aradu.N21E2 105 DAINFSL--GNGVQRGSKRMHHPAN-YLDNMTDATYNTKDVRITDAFPVTIIPSDAIKSHQAKKTKENKtiSPKASKTPsKGKKMGEDLNQRASSEG- 198
                  *988887..5667799999998877.6689*******************999988888777776665551146665554255665666655555555. PP

    GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                   ++ k+e++ +d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+SvyPLP+ +++r+aRi+grKmS+++f++lL++ aa+G+dls 
  Aradu.N21E2 199 -TKFKSEWDRQDVGLNLVTFDETYMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFAAQGHDLSV 295
                  .78*********************************************************************************************** PP

    GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                  p+DLkd+WA+HGtn+++ti+
  Aradu.N21E2 296 PLDLKDYWARHGTNRYITIK 315
                  *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.0E-942315IPR010409GAGA-binding transcriptional activator
SMARTSM012262.9E-1322315IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMDDGQKHGN SRHTIDYYRG ANSPWSMASQ HQVTEPNALV MNKKIRSIMA ERRAILELEA  60
AISEKNEALA ARDEALRQRD EAIAQRDNAI RERDNALAAL QNREDAINFS LGNGVQRGSK  120
RMHHPANYLD NMTDATYNTK DVRITDAFPV TIIPSDAIKS HQAKKTKENK TISPKASKTP  180
SKGKKMGEDL NQRASSEGTK FKSEWDRQDV GLNLVTFDET YMPVPVCTCT GVPRQCYKWG  240
NGGWQSSCCT TTLSVYPLPQ LPNKRHARIG GRKMSGSVFT RLLSRFAAQG HDLSVPLDLK  300
DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N21E2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937899.10.0protein BASIC PENTACYSTEINE4
RefseqXP_015937901.10.0protein BASIC PENTACYSTEINE4
RefseqXP_015937902.10.0protein BASIC PENTACYSTEINE4
RefseqXP_025616048.10.0protein BASIC PENTACYSTEINE4
RefseqXP_025616049.10.0protein BASIC PENTACYSTEINE4
RefseqXP_025616050.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-123BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A445C1Y00.0A0A445C1Y0_ARAHY; Uncharacterized protein
STRINGGLYMA05G38430.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-120basic pentacysteine 4