PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N3085
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 138aa    MW: 15792.1 Da    PI: 9.5778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N3085genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.5e-17221031197
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                  l+++ l +p kf+ ++  k +     tl  + g +W+v++   k+ +++++  GW++F ++n +k  Df+vF++dg+ + f  +v++f
  Aradu.N3085  22 LNTHHLKIPTKFL-NYLDK-KLMSNATLIGPCGGKWQVTI--IKRENGVYMDHGWSKFLQENLVKHEDFLVFTYDGNnNHF--KVQIF 103
                  56778********.66333.35558***************..999999***************************976666..99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-228108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-219108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.6612106IPR003340B3 DNA binding domain
CDDcd100173.07E-1913104No hitNo description
SMARTSM010191.6E-914106IPR003340B3 DNA binding domain
PfamPF023626.8E-1422104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMHHHHQQNK PNSFCAIIMN GLNTHHLKIP TKFLNYLDKK LMSNATLIGP CGGKWQVTII  60
KRENGVYMDH GWSKFLQENL VKHEDFLVFT YDGNNNHFKV QIFCKNGCEA PKPNVGNGTK  120
KSRPTTSCPQ ISPENERS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N3085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539033.22e-26B3 domain-containing protein Os11g0197600
RefseqXP_004507367.11e-27B3 domain-containing protein Os11g0197600-like
RefseqXP_028186698.12e-26B3 domain-containing protein Os11g0197600-like
TrEMBLA0A445A8W92e-88A0A445A8W9_ARAHY; Uncharacterized protein
STRINGXP_004507367.14e-27(Cicer arietinum)
STRINGGLYMA11G13231.17e-26(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-16B3 family protein