PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N4Y9K
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 300aa    MW: 34498.6 Da    PI: 7.113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N4Y9KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll + ++  G g+W++ a++ g++Rt+k+c++rw++yl
      Aradu.N4Y9K 30 RGPWTLEEDNLLTQSIANQGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding52.31.3e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Aradu.N4Y9K  83 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3942577IPR017930Myb domain
SuperFamilySSF466891.68E-2928124IPR009057Homeodomain-like
SMARTSM007171.4E-132979IPR001005SANT/Myb domain
PfamPF002491.5E-133077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-213184IPR009057Homeodomain-like
CDDcd001675.95E-103277No hitNo description
PROSITE profilePS5129425.37978132IPR017930Myb domain
SMARTSM007173.4E-1582130IPR001005SANT/Myb domain
PfamPF002491.3E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2385131IPR009057Homeodomain-like
CDDcd001671.25E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
ESISPTIITM MSSSKSVSSS GSEDDNEIRR GPWTLEEDNL LTQSIANQGE GRWNLLAKCS  60
GLKRTGKSCR LRWLNYLKPD VKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI  120
KNYWRTKIQK QARHLKIDTD SREFQELVRR FWIPRLLQKA RESSSSSAMP IQNQATMPVS  180
QYSPAATTPP PCVHPTCPNY LDQRLEQHSN GSCVSFSEPK LPQLLGYNSN NFGNGLDTDE  240
FGTFTYDYGY HVNSNGYDNE TLNMEYPVDD CQMARHNWVN DFACDLWNMD ECCQFSNFKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24271394110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N4Y9K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954393.10.0myb-related protein 305
TrEMBLA0A445DXB20.0A0A445DXB2_ARAHY; Uncharacterized protein
STRINGGLYMA08G04670.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-79myb domain protein 62