PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N5F6J
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 337aa    MW: 37951.7 Da    PI: 4.4334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N5F6JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12170213654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Aradu.N5F6J 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 213
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-15166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15171226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-5171217No hitNo description
CDDcd048730.00134263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELSQLGFLE ELMLAPRKDT WSSCTSNDVF SPSSWNYFDP FLDTPSSSSF PPSAFSPPPP  60
DCPFTTSYPF PDDAFTMPDL DSSYTTKYEY EYDDAPPPPL PHNHQDLDDD NNNPSVLDDE  120
DAGFLGCKVE EQAVVDVQVH VPVVFNMGMC GIGEKKNKSK KLEGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEEVEEGTS QQNLLGVSKE  240
LKPNEAMVRN SPKFDVERRD KDTRISICCA TKPGLLLSTV NTLEALGLEI QQCVISSFND  300
FSMQASCSEV SEQRNCVDPE EIKQALFRNA GYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N5F6J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956676.10.0transcription factor bHLH61
RefseqXP_025690423.10.0transcription factor bHLH61
SwissprotQ9LSL12e-90BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445DQ400.0A0A445DQ40_ARAHY; Uncharacterized protein
STRINGGLYMA01G02390.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-92beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]