PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N5GDJ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 357aa    MW: 39269.6 Da    PI: 7.8666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N5GDJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15274299126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tGtC+yGd C+FaHg
  Aradu.N5GDJ 274 FKTELCNKWQETGTCPYGDHCQFAHG 299
                  79***********************8 PP
2zf-CCCH18.34.1e-06312336125
                  --S---SGGGGTS.--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                  ykte Cr  ++ G  C+yG rC+F H
  Aradu.N5GDJ 312 YKTEVCRMVLA-GvVCPYGHRCHFRH 336
                  9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-19269306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11270305IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004273301IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-8307341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11307340IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803311339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MHNKEACSPS SNGGFGANTA TGGGQIQSNG GALASFYSAL LNDNPSLSAN SSSSLYPYSE  60
SGTQINSYDS CVIQKHQDMV NRHSMCLNRL VETSKEVESL RQENAHLRAV NKELQKQLNF  120
VIQASLENQF GGGSSCQGQT TPFDVVHGFR GFQIGEGKEN CGDWNSNNTN NNSNNNKEQE  180
VSDESPTSVI ENNGVEVERF SLPKSISVRS NGYLKMAQSA AAATATNTTT CRTKPTTRPR  240
VSSTPPDAVQ KVYVRGGKTE EEPLEMVVYN QGMFKTELCN KWQETGTCPY GDHCQFAHGI  300
GELRPVIRHP RYKTEVCRMV LAGVVCPYGH RCHFRHALTE QEKAISHPKP RTIKLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21274340470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N5GDJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-109AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942154.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F52e-83C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A444XV280.0A0A444XV28_ARAHY; Uncharacterized protein
STRINGXP_007142975.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-79C3H family protein