PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N9KWN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24246.7 Da    PI: 8.7083
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N9KWNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-221048240
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i++
  Aradu.N9KWN 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVM 48
                 8************************************97 PP
2K-box72.31.4e-24671471292
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                  + a++ ++e+a L+++++ Lq+ +R+l+Ge+L+ L ++eLq+Le+qLe slk +R kK+++++++i+el +k  e++++n 
  Aradu.N9KWN  67 NPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNG 147
                  4467899******************************************************************99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.38150IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-23159IPR002100Transcription factor, MADS-box
CDDcd002651.37E-32262No hitNo description
PRINTSPR004041.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-201049IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.52469185IPR002487Transcription factor, K-box
PfamPF014862.5E-2270146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVMKS IIERYNKLKE  60
EHNQLMNPAS EVKREAASLR QQLQHLQECH RKLMGEELSG LGVQELQNLE NQLEMSLKGV  120
RMKKDQIFTD EIKELHQKVY EARSTNGENA ASNPPYTIGN GYDLLAPISL QLSQPETQYT  180
EPPAKAMKLG NQISASDCSC NNKNCSRIVD DYHF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N9KWN
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968102e-31BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622236.11e-142MADS-box transcription factor 23
RefseqXP_025681007.11e-142MADS-box transcription factor 23 isoform X1
RefseqXP_025681008.11e-142MADS-box transcription factor 23 isoform X1
SwissprotQ9SI381e-61ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A444WXJ91e-135A0A444WXJ9_ARAHY; Uncharacterized protein
STRINGGLYMA13G32810.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.14e-64AGAMOUS-like 44
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Yan Y,Wang H,Hamera S,Chen X,Fang R
    miR444a has multiple functions in the rice nitrate-signaling pathway.
    Plant J., 2014. 78(1): p. 44-55
    [PMID:24460537]
  3. Lei L, et al.
    Nitrogen use efficiency is regulated by interacting proteins relevant to development in wheat.
    Plant Biotechnol. J., 2018. 16(6): p. 1214-1226
    [PMID:29193541]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]