PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.NB41M

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 245aa MW: 26984.3 Da PI: 9.6442

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.NB41M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.9e-12	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG+g+W+ I+r Rt+ q+ s+ qky Aradu.NB41M 95 PWSQEEHRLFLIGLEKLGKGDWRGISRNYVVSRTPTQVASHAQKY 139 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.515	3	19	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	17.52	87	144	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.9E-17	91	142	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.05E-15	91	144	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-8	92	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-10	93	138	IPR009057	Homeodomain-like
CDD	cd00167	9.99E-9	95	140	No hit	No description
Pfam	PF00249	8.6E-10	95	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MNRRCSGCSK NGHNSRTCPY YSSSASRTTV TTVKLFGVRL SMTHGSGSCS AASPNHNSPF 60 SHYSSDGYVL DSEPSTPAAT INCHHPPPSI NKGIPWSQEE HRLFLIGLEK LGKGDWRGIS 120 RNYVVSRTPT QVASHAQKYF IRLRQSNATP RKRRSSLFDM FKNLASNSPS LKEEQVLLQP 180 SKNSQLSNVE EELNETIMVS NEATPASPLP GFFRPPYPAL PFSSWPSSAC SFGEATLILD 240 GRPLH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.NB41M

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015938348.1	0.0	transcription factor MYBS3
Refseq	XP_025617774.1	0.0	transcription factor MYBS3
Swissprot	Q7XC57	1e-48	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A444XCQ1	1e-172	A0A444XCQ1_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_2092.1	2e-60	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29920	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-45	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]