PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.NC1XP

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 529aa MW: 60182.5 Da PI: 8.0965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.NC1XP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89	6.5e-28	76	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s +s+++ ++++r+ vCs+eg+r++ +++ + +r+r++tr+gCka+++vkk+ gkw+++k+ ++HnH+l+p Aradu.NC1XP 76 FYNAYARRIGFSTRVSVCLRSRKDSSVIRRRVVCSREGFRRNPENH--DPKRHRSVTRVGCKAQITVKKKGpLGKWYISKFIKDHNHDLVP 164 9***************************************9988..9999**************99**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-25	76	164	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.707	330	362	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-8	336	361	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-6	337	364	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MRHRNVPQSM DLEMEATGFE SEEEEEEEDD EDDEEEQHPQ TNNNYNNPSS SNSNPNSTTE 60 PYIGMEFDSE LSARAFYNAY ARRIGFSTRV SVCLRSRKDS SVIRRRVVCS REGFRRNPEN 120 HDPKRHRSVT RVGCKAQITV KKKGPLGKWY ISKFIKDHNH DLVPPDRVHC LRSHRRVNGA 180 ARSLIDTLHA AGMGAAEVMT VLIKESGGID NVGFTKVDCQ NYMTSSSKRS LGSGNQLTLI 240 KQYEKGVADR YEKEVKEDYD TLNTAPVLRT PSPMEKQAAG LYTRKIFARF QEELVETLAY 300 AATLMDDARS QATYRVAKYG EENRAHFVRF NVFRKKASCS CQMFEFAGLV CRHILAVFRV 360 INILTLPSHY ILKRWTRNAK SILLDKGARE LQNSLEECYS SRYDSLSREI MSYVEMGAES 420 SDTYSVALNG LREAAKKVAD AKKPRPAPVQ STSDNNENHE SSQSSDTDQD KKIQELTTEL 480 EGARQRCESY RQNLFGLLKN MEEQKLKISV KAQSVRLNLG SELVAEESK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MRHRNVPQSM DLEMEATGFE SEEEEEEEDD EDDEEEQHPQ TNNNYNNPSS SNSNPNSTTE  60
PYIGMEFDSE LSARAFYNAY ARRIGFSTRV SVCLRSRKDS SVIRRRVVCS REGFRRNPEN  120
HDPKRHRSVT RVGCKAQITV KKKGPLGKWY ISKFIKDHNH DLVPPDRVHC LRSHRRVNGA  180
ARSLIDTLHA AGMGAAEVMT VLIKESGGID NVGFTKVDCQ NYMTSSSKRS LGSGNQLTLI  240
KQYEKGVADR YEKEVKEDYD TLNTAPVLRT PSPMEKQAAG LYTRKIFARF QEELVETLAY  300
AATLMDDARS QATYRVAKYG EENRAHFVRF NVFRKKASCS CQMFEFAGLV CRHILAVFRV  360
INILTLPSHY ILKRWTRNAK SILLDKGARE LQNSLEECYS SRYDSLSREI MSYVEMGAES  420
SDTYSVALNG LREAAKKVAD AKKPRPAPVQ STSDNNENHE SSQSSDTDQD KKIQELTTEL  480
EGARQRCESY RQNLFGLLKN MEEQKLKISV KAQSVRLNLG SELVAEESK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.NC1XP

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015946836.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015946837.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015946838.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020989821.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020989822.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020989823.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	3e-85	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445B0P9	0.0	A0A445B0P9_ARAHY; Uncharacterized protein
STRING	XP_004301609.1	1e-116	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-85	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]