PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.NEH05

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 300aa MW: 32826.7 Da PI: 9.5829

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.NEH05	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	1.9e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Aradu.NEH05 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.569	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-32	39	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-24	42	97	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.18E-16	42	98	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-7	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-15	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MYPRLIHPHE AGLVGQEDVQ VGGASNLTHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDMGEGCKD GLSGSYLESP 120 GTDNSSPKLP TSDTNEGFEI KEALRAQMEV QSKLHLQVEA EKHLQIRQDA EQRYMVMLER 180 ACKMLADQFI GATVIDTDNQ KFQGVGSKTP RGPMVDPLGF FSMPSTEVAG VNVSRHRGLT 240 VRLKTTGGLI LEGSPGEGKR RLLGMDSMAA PLIWTEAKMR TQAINVAQGN PHGITRYAGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-19	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.NEH05

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197621.1	0.0	protein PHR1-LIKE 2 isoform X1
Refseq	XP_016197622.1	0.0	protein PHR1-LIKE 2 isoform X1
Refseq	XP_025646122.1	0.0	protein PHR1-LIKE 2 isoform X1
Refseq	XP_025646123.1	0.0	protein PHR1-LIKE 2 isoform X1
TrEMBL	A0A444ZDC9	0.0	A0A444ZDC9_ARAHY; Uncharacterized protein
TrEMBL	A0A445DJE3	0.0	A0A445DJE3_ARAHY; Uncharacterized protein
STRING	XP_004486388.1	1e-179	(Cicer arietinum)
STRING	GLYMA15G12930.1	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-63	G2-like family protein