PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NL5W9
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 127aa    MW: 14721.2 Da    PI: 10.3426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NL5W9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-1213793298
                 --SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 32 esktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+++++
  Aradu.NL5W9 13 EGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQVGDTVTFSRLE-PEGRLVMGFRK 79
                 44568999***********9989999999***9.********************766.67777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0035181IPR003340B3 DNA binding domain
PROSITE profilePS508639.573181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.05E-10479IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-18485IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-10479No hitNo description
PfamPF023621.1E-91379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MKQAYFPPIS QPEGLPLKIL DAKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQVGD  60
TVTFSRLEPE GRLVMGFRKA SNATPSDQRF HFWKQKKPLI SNCGAICNSL QKIKTDKYIQ  120
RQPKVID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-4538346126B3 domain-containing transcription repressor VAL1
5yzz_C8e-4538346126B3 domain-containing transcription repressor VAL1
5z00_C8e-4538346126B3 domain-containing transcription repressor VAL1
5z00_G8e-4538346126B3 domain-containing transcription repressor VAL1
5z00_K8e-4538346126B3 domain-containing transcription repressor VAL1
5z00_M8e-4538346126B3 domain-containing transcription repressor VAL1
6j9a_A8e-4538347127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NL5W9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-61AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943443.11e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_016180730.12e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_020970625.12e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_020989871.11e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_025622085.12e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_025681660.12e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_029145383.12e-52B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_029152134.12e-52B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ5CCK41e-45VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A444WY856e-55A0A444WY85_ARAHY; Uncharacterized protein
STRINGGLYMA15G07350.19e-50(Glycine max)
STRINGXP_007148240.11e-49(Phaseolus vulgaris)
STRINGXP_010040771.14e-50(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2993422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.15e-48HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]