PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.NP2P2

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 499aa MW: 57406.1 Da PI: 9.2337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.NP2P2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.3	1.3e-18	68	154	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ + k g w ++k++l+H+H+++p Aradu.NP2P2 68 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQSITCSREGKWKSKISP---TEKTNPTASLNCPARIYIYTLKdVGAWIISKVVLDHSHPCCP 154 6**************98887..888**********998877...8999*********9877769*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-16	68	154	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	313	349	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-5	315	346	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	324	351	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MDDSTSDYQL NQGEVDYEFE SNVVIETLGC RSDFLGVFFV EAWPLSVVDD QFVLKVEMTF 60 TTLEDVEKFY RNYAKAAGFS TRVRSTNRKG NEIKNQSITC SREGKWKSKI SPTEKTNPTA 120 SLNCPARIYI YTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHRKLSMSI RRTIENNEEA 180 DRHIWVPIYL DHNFWTGMRS TQRSESMHSF FNKFITQNSS LIQFVKKYDN CLRSREQAER 240 ESDAADFYTV IPCATKSSIE AQFQDMYTHQ KFREVQAQLR GKANCITRLT NSALGYSVYE 300 VREQVSSSIF NKFVVTYDSV AADVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE 360 RWSKKVKRRH THIKSSHNEP LLEPRSKRFD ELVFRSQNVC EFASESKELT AILHRAYGTV 420 MVEMKELKAK RKGTSSLSHE DANLKSIKNA SKKKKTKALN ELNFFDVGSM VHSNSSQYQG 480 RVMNYQFRVS AAADNSLGI

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MDDSTSDYQL NQGEVDYEFE SNVVIETLGC RSDFLGVFFV EAWPLSVVDD QFVLKVEMTF  60
TTLEDVEKFY RNYAKAAGFS TRVRSTNRKG NEIKNQSITC SREGKWKSKI SPTEKTNPTA  120
SLNCPARIYI YTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHRKLSMSI RRTIENNEEA  180
DRHIWVPIYL DHNFWTGMRS TQRSESMHSF FNKFITQNSS LIQFVKKYDN CLRSREQAER  240
ESDAADFYTV IPCATKSSIE AQFQDMYTHQ KFREVQAQLR GKANCITRLT NSALGYSVYE  300
VREQVSSSIF NKFVVTYDSV AADVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE  360
RWSKKVKRRH THIKSSHNEP LLEPRSKRFD ELVFRSQNVC EFASESKELT AILHRAYGTV  420
MVEMKELKAK RKGTSSLSHE DANLKSIKNA SKKKKTKALN ELNFFDVGSM VHSNSSQYQG  480
RVMNYQFRVS AAADNSLGI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.NP2P2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_020997233.1	1e-180	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-32	far-red elongated hypocotyls 3