PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.NS2V2

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 233aa MW: 25542.7 Da PI: 7.0041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.NS2V2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r++dPvyG++g i++lqqq++ l +el++++ Aradu.NS2V2 52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLKDPVYGCMGAISSLQQQVQYLISELNAVR 149 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aradu.NS2V2 150 DE 151 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.388	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-40	52	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
SFCLIRSDRE RSDDEIGKKI KREGDGQKGR RQHMLGSQQE GASGGTINTI TPCAACKLLR 60 RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKLLMEV PENQRADAAN SLVYEANVRL 120 KDPVYGCMGA ISSLQQQVQY LISELNAVRD EIIKYKLREV NNAIIPSSSH HVMLPSSSSS 180 EVVSIAVPPP PPPPNDDILP PNSSTSSSMV YPQQTDDPSN YGTISSDNIS YFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-45	51	168	10	125	LOB family transfactor Ramosa2.1
5ly0_B	3e-45	51	168	10	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.NS2V2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015973740.1	1e-166	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-75	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A444YDS0	1e-151	A0A444YDS0_ARAHY; Uncharacterized protein
STRING	XP_007137607.1	7e-94	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-74	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]