PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NTN47
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 222aa    MW: 24045.6 Da    PI: 5.6652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NTN47genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16148194455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Aradu.NTN47 148 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 194
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-19141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-20141201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-18147198No hitNo description
PfamPF000101.1E-13148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGDHMYNYDK NLSSSSSSQD EISLFLRQIL LRSSQPHQDS PPPPQQQQQQ QLPSSSSSSC  60
FPSTSQLQDG KISALGSTPA GFLSASSMKG HGGNSAPNVS SSSVGLSAND TDDYDCESEE  120
GVEALAEDVP AKPVPSRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA  180
SMLDEAIEYL KQLQLQVQVC VTFTSCIIVI CGWPNLPQAV DS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NTN47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963992.11e-138transcription factor SPATULA isoform X2
RefseqXP_025698688.11e-138transcription factor SPATULA isoform X2
TrEMBLA0A444WT761e-160A0A444WT76_ARAHY; Uncharacterized protein
STRINGXP_007156787.13e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-29bHLH family protein