PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NZ6TR
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 649aa    MW: 74734.5 Da    PI: 8.325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NZ6TRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1561.4e-17242331190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++YA + GF vr ++ ++   +g +++ +  C++ g+r+ee +k+e+   +r+ tr  C+a+++ + ++  +kw+v +l +eH+H l+
  Aradu.NZ6TR 242 RFYKTYAMMHGFAVRLDEVRRD-SDGCVIMCQIICNRAGSRREEVEKHERIWDHRPLTRSFCRARIRARIDRkIHKWKVVSLYEEHSHGLV 331
                  5****************99998.8899********************999999****************99889**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-14242331IPR004330FAR1 DNA binding domain
SuperFamilySSF577561.61E-5606641IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.697618635IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MSRTSLQSTM SCITSHSSLK LKEKIKLYPP IDPAPPPAGR SHANHRSHLN PAVPSHVQAL  60
RVEDWRHRRS LKLSPLFESA LSIWNLPSPL TSPFVLFALQ TPLKHDFKGK DIIIAKISKN  120
TRLELIKAIG IIHSRMDLNL NKVGCIQLSI EVLKHKEASQ PNWEHKSVAV FNVYVDFREI  180
KPSDGDFFGT DSDEEFPRRD NLDFLDDDSE ADKDRPQDKR IAELSQEDIM QLQFTDEEAV  240
YRFYKTYAMM HGFAVRLDEV RRDSDGCVIM CQIICNRAGS RREEVEKHER IWDHRPLTRS  300
FCRARIRARI DRKIHKWKVV SLYEEHSHGL VDPLDISMMR EYYTFSVSDK AQAKNLHAIG  360
IRTCHILRYL ASQKDILLEF INNMETVVSH YRNNARVAEF NSKYTDPVLV TSLPTLEDFA  420
AKIFTRNMFQ EVRKKIEGAC AMNTELVIQD GGKLYFKCNN FGVPEIDHVV EFDIVGRMLR  480
CECLWFENRE IPYMHIFACL KHQHIEVIPE RLVCKRWTKN AKSDFMKSNI DDPNDSDKVL  540
KCRLGVLGAE CSRLIDVACK NSSDFVEAMN DVVNTITKTQ NRGENPRNGN LDDNYVVDPL  600
VVKSKGAPKK NSKFKQHRRC SNCSVTGHYN KSCPSVSGRI PKEPIDDDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NZ6TR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972700.10.0uncharacterized protein LOC110269299
TrEMBLA0A445AG210.0A0A445AG21_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-13FAR1-related sequence 5