PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PA2UE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 590aa    MW: 65998.6 Da    PI: 9.3545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PA2UEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.61.1e-14578188
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                 +fYneYA+++GF+ + s +++sk +g    r+fvC   g +++ +++              C+a+++++++ ++kw vtk+++eH+H+
  Aradu.PA2UE  5 NFYNEYARRLGFNPKASPQSRSKPDGANAYREFVCGGDGLKRKPNET--------------CNAMIRIERKGQHKWFVTKFVKEHSHS 78
                 6**************************************99998777..............**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-10579IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.078259295IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-10259293IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-7270297IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAAKNFYNEY ARRLGFNPKA SPQSRSKPDG ANAYREFVCG GDGLKRKPNE TCNAMIRIER  60
KGQHKWFVTK FVKEHSHSTS SSGEVHSLQP RRHFSSVGRT MPETYQGVGL VPSGVMYISM  120
DRAPGNRNST ENIHGSRNFP AVGAKTNHQV SAVVTKTNHQ VPAVAAKSNH QVPAVYEQAM  180
EMWFEREIEL DSETICSQPV LKTPSPMEKQ TANLYTRKVF SKFQEELVET FVYTANRIEE  240
EGANSIFRVA KFEDDQKAYI VTLNHSELKA ECSCQMFEYS GILCRHVLTV FTVTNVLTLP  300
SHYILKRWTR NAKSYVGLDE HASESHGLDS MTSRYGTLCR EAIKYAEDGA ISVETYSAAM  360
GALRDVGKKV AAAKRNFAKV APASSRSISN AHDDKKNQTS RSDTPPLLWP RHDETTRRFN  420
LNDAGAPVQQ SFGDLNFPRM APVSVQRDDG QDENMVVLPC MKSMTWVMEN RSSTPGNKVA  480
VINLKLQDYT KVPSAETEVK FQLSRVSLEP MLKSMAGISE QLSTPANKVA VINLKLQDSD  540
TISGESEVKF QVSRDTLGAM QRSMSYIREQ LSSDGYVQSD PISVTKRQKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PA2UE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973535.20.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_025608901.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2P5WSL30.0A0A2P5WSL3_GOSBA; Uncharacterized protein
STRINGXP_009365699.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]