PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PEH3C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 256aa    MW: 27371.5 Da    PI: 7.6097
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PEH3CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.6e-40401401100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r++a+++++yeA+ar++dPvyG+v++il+lqqq+++l+ae+a++
  Aradu.PEH3C  40 PCGACKFLRRKCVAGCIFAPHFSSDQgAAKFAAVHKVFGASNVSKLLLHVPAHRRNEAVATICYEAQARLSDPVYGCVSTILSLQQQVASLQAEVAMT 137
                  7************************989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Aradu.PEH3C 138 QTQ 140
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95139141IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3940138IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.1600.104.4E-6122182No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAEPQGGGAE GSRRRSTSAA RRGAAAPTQE GAPPPSPSSP CGACKFLRRK CVAGCIFAPH  60
FSSDQGAAKF AAVHKVFGAS NVSKLLLHVP AHRRNEAVAT ICYEAQARLS DPVYGCVSTI  120
LSLQQQVASL QAEVAMTQTQ VMNGRIAYAS VLDTTQQQQQ QQQQALQHHH PNMINTLGLY  180
PAFSNSSSAS TTNLMNITNF NPATGGFDLS MEAATAPSSS HSIHPLHHNS NFSRLSQYDD  240
DDEQESKIPP VFNPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-38251431113LOB family transfactor Ramosa2.1
5ly0_B6e-38251431113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PEH3C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015947028.10.0LOB domain-containing protein 20
SwissprotQ9SRV31e-63LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A445B1Q61e-153A0A445B1Q6_ARAHY; Uncharacterized protein
STRINGGLYMA10G11031.19e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-50LOB domain-containing protein 20