PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PES60
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 203aa    MW: 22929.9 Da    PI: 8.4116
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PES60genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70292.68.5e-292178360
       DUF702  3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60
                 + +++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstWvp+++rr r+ +++ + 
  Aradu.PES60 21 QSSTKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHIKSTWVPVDRRRLRKVNNHFQL 78
                 56789********************************************987666544 PP
2DUF702622.2e-199715199153
       DUF702  99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                    ++ +lP+  +s+a+fr+v v+s+d + +e++Yqt v+igGhvf+G+Lyd+G++
  Aradu.PES60  97 VEDKLKLPSATNSMAIFRRVEVRSMDHAVNEIGYQTCVNIGGHVFSGLLYDHGPA 151
                  445567***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.9E-4123151IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.2E-252567IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-16103150IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPTATNSIEK EEEETGIKGD QSSTKCQDCG NQAKKECSYW RCRTCCKNKG FHCQTHIKST  60
WVPVDRRRLR KVNNHFQLYH PHISKKHKHF YSPSPGVEDK LKLPSATNSM AIFRRVEVRS  120
MDHAVNEIGY QTCVNIGGHV FSGLLYDHGP AAVAAAPFLD HHHQQNLNHG ASMGPVDDVD  180
EPFLPPPPLS DPLRTPYFSF PKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570RRRLRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PES60
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932743.11e-153protein SHI RELATED SEQUENCE 3-like
RefseqXP_025611435.11e-153protein SHI RELATED SEQUENCE 3
TrEMBLA0A445CFL21e-152A0A445CFL2_ARAHY; Uncharacterized protein
STRINGGLYMA06G01160.22e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.11e-37SHI-related sequence3