PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PSF4U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28579.2 Da    PI: 4.6144
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PSF4UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-2068121356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t+eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Aradu.PSF4U  68 KKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 121
                  56789************************************************9 PP
2HD-ZIP_I/II134.92.8e-4367158192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl++eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l +  +++ ke+e+L++e+ 
  Aradu.PSF4U  67 EKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENEKLKSEVV 158
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2057125IPR009057Homeodomain-like
PROSITE profilePS5007118.26963123IPR001356Homeobox domain
SMARTSM003891.5E-1966127IPR001356Homeobox domain
PfamPF000466.5E-1868121IPR001356Homeobox domain
CDDcd000864.51E-1868124No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2269130IPR009057Homeodomain-like
PRINTSPR000313.5E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6103119IPR000047Helix-turn-helix motif
PfamPF021835.1E-19123165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MESGGRLFFD PSACRGNNNM LFLGTTADLA FRGRSILSMD ESSKRRPFFS SPDDLFDDEY  60
YEEQLPEKKR RLTSEQVNLL EKSFEEENKL EPERKTQLAK KLGLQPRQVA VWFQNRRARW  120
KTKQLERDYD VLKASYDSLL STYDSIVKEN EKLKSEVVSL NEKLQLQAKD MPGEPISDNK  180
AEPLPVEIAQ IISMKVEDRL STGSVGSAVV DEGSSPQLVV ESVDSYLNQE EGEVLRWWGN  240
IMLNNAAVLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PSF4U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967037.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022838e-87HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A445D0W41e-172A0A445D0W4_ARAHY; Uncharacterized protein
STRINGXP_007151094.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-83homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]